PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.006G010700.1
Common NamePHAVU_006G010700g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23831.4 Da    PI: 9.7179
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.006G010700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.4e-171152344
                        --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS
              SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44
                        i+n+s+r++t+skR+ng+ KK +E+ +LC++e++ ii+ +++
  Phvul.006G010700.1 11 IKNDSKRKTTLSKRKNGLVKKINEINILCGIEACAIIYTPDN 52
                        9*************************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.297152IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-20160IPR002100Transcription factor, MADS-box
CDDcd002663.76E-27282No hitNo description
SuperFamilySSF554556.54E-22294IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-10323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-161152IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004047.8E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MTRKKVDLTY IKNDSKRKTT LSKRKNGLVK KINEINILCG IEACAIIYTP DNPQPEVWPS  60
ESGVQSVLSR LRGVSELEKG KKKLCQESFL RQRIIKAQAQ LRKLRNEIRK KEVTLLMFQY  120
LNAKNNFDNS RMIDLNDISN LIDQNLEKIE NYISISQAQK VKPFVDNGGE TMSSFVNHVK  180
GYETNVEAIQ NDVLSMDLIN DNGDEIKP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150381e-173AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007146077.11e-151hypothetical protein PHAVU_006G010700g
SwissprotQ9FJK33e-41AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLV7BND01e-151V7BND0_PHAVU; Uncharacterized protein
STRINGGLYMA03G19880.12e-72(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-42AGAMOUS-like 80